Uses of Package
org.biojava.bio.dist

Packages that use org.biojava.bio.dist
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
org.biojava.bio.gui Graphical interfaces for biojava objects. 
org.biojava.bio.molbio The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. 
org.biojava.bio.program.hmmer Tools for working with profile Hidden Markov Models from the HMMer package. 
org.biojava.bio.program.phred Parser for Phred output 
org.biojava.bio.seq Classes and interfaces for defining biological sequences and informatics objects. 
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
org.biojavax.ga.functions GA functions 
org.biojavax.ga.util Utility functions and helper classes 
 

Classes in org.biojava.bio.dist used by org.biojava.bio.dist
AbstractDistribution
          An abstract implementation of Distribution.
Count
           An encapsulation of a count over the Symbols within an alphabet.
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory
           A thing that can make Distributions.
DistributionTrainer
           An object that can be used to train a distribution up.
DistributionTrainerContext
          A context within a group of DistributionTrainers can be trained together.
IgnoreCountsTrainer
          A distribution trainer that just ignores all counts.
OrderNDistribution
          Provides an N'th order distribution.
SimpleDistribution
          A simple implementation of a distribution, which works with any finite alphabet.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.dp
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory
           A thing that can make Distributions.
DistributionTrainerContext
          A context within a group of DistributionTrainers can be trained together.
SimpleDistributionTrainerContext
          A no-frills implementation of DistributionTrainerContext.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.gui
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.molbio
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.program.hmmer
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory
           A thing that can make Distributions.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.program.phred
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.seq
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
 

Classes in org.biojava.bio.dist used by org.biojava.bio.symbol
Distribution
           An encapsulation of a probability distribution over the Symbols within an alphabet.
 

Classes in org.biojava.bio.dist used by org.biojavax.ga.functions
OrderNDistribution
          Provides an N'th order distribution.
 

Classes in org.biojava.bio.dist used by org.biojavax.ga.util
OrderNDistribution
          Provides an N'th order distribution.