Uses of Interface
org.biojava.bio.dist.DistributionTrainerContext

Packages that use DistributionTrainerContext
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
 

Uses of DistributionTrainerContext in org.biojava.bio.dist
 

Classes in org.biojava.bio.dist that implement DistributionTrainerContext
 class SimpleDistributionTrainerContext
          A no-frills implementation of DistributionTrainerContext.
 

Methods in org.biojava.bio.dist with parameters of type DistributionTrainerContext
 void DistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
           Registers that sym was counted in this state.
 void IgnoreCountsTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
           
 void SimpleDistribution.Trainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
           
 void SimpleDistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double count)
          Deprecated.  
 void DistributionTrainer.clearCounts(DistributionTrainerContext dtc)
          Clears all of the counts to zero.
 void IgnoreCountsTrainer.clearCounts(DistributionTrainerContext dtc)
           
 void SimpleDistribution.Trainer.clearCounts(DistributionTrainerContext dtc)
           
 void SimpleDistributionTrainer.clearCounts(DistributionTrainerContext dtc)
          Deprecated.  
 double DistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
           Get the current count for this state.
 double IgnoreCountsTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
           
 double SimpleDistribution.Trainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
           
 double SimpleDistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
          Deprecated.  
 void AbstractDistribution.registerWithTrainer(DistributionTrainerContext dtc)
          Register an IgnoreCountsTrainer instance as the trainer for this distribution.
 void AbstractOrderNDistribution.registerWithTrainer(DistributionTrainerContext dtc)
           
 void Distribution.registerWithTrainer(DistributionTrainerContext dtc)
           Register this distribution with a training context.
 void GapDistribution.registerWithTrainer(DistributionTrainerContext dtc)
           
 void PairDistribution.registerWithTrainer(DistributionTrainerContext dtc)
           
 void SimpleDistribution.registerWithTrainer(DistributionTrainerContext dtc)
          Register an SimpleDistribution.Trainer instance as the trainer for this distribution.
 void TranslatedDistribution.registerWithTrainer(DistributionTrainerContext dtc)
           
 void UniformDistribution.registerWithTrainer(DistributionTrainerContext dtc)
           
 void UntrainableDistribution.registerWithTrainer(DistributionTrainerContext dtc)
           
 void DistributionTrainer.train(DistributionTrainerContext dtc, double weight)
           Trains the Distribution, given a null model.
 void IgnoreCountsTrainer.train(DistributionTrainerContext dtc, double weight)
           
 void SimpleDistribution.Trainer.train(DistributionTrainerContext dtc, double weight)
           
 void SimpleDistributionTrainer.train(DistributionTrainerContext dtc, double weight)
          Deprecated.  
protected  void SimpleDistribution.Trainer.trainImpl(DistributionTrainerContext dtc, double weight)
           
 

Uses of DistributionTrainerContext in org.biojava.bio.dp
 

Subinterfaces of DistributionTrainerContext in org.biojava.bio.dp
 interface ModelTrainer
          Encapsulates the training of an entire model.
 

Classes in org.biojava.bio.dp that implement DistributionTrainerContext
 class SimpleModelTrainer