Uses of Interface
org.biojava.bio.dist.DistributionFactory

Packages that use DistributionFactory
org.biojava.bio.dist Probability distributions over Alphabets. 
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
org.biojava.bio.program.hmmer Tools for working with profile Hidden Markov Models from the HMMer package. 
 

Uses of DistributionFactory in org.biojava.bio.dist
 

Classes in org.biojava.bio.dist that implement DistributionFactory
static class DistributionFactory.DefaultDistributionFactory
           The default DistributionFactory implementation.
 class OrderNDistributionFactory
          Default factory for Order-N distributions.
 

Fields in org.biojava.bio.dist declared as DistributionFactory
static DistributionFactory DistributionFactory.DEFAULT
           The default DistributionFactory object.
static DistributionFactory OrderNDistributionFactory.DEFAULT
          Factory which used DistributionFactory.DEFAULT to create conditioned distributions.
 

Constructors in org.biojava.bio.dist with parameters of type DistributionFactory
OrderNDistributionFactory(DistributionFactory df)
          Construct a new OrderNDistributionFactory with a specified factory for conditioned distributions.
TranslatedDistribution(ReversibleTranslationTable table, Distribution other, DistributionFactory distFact)
          Create a new TranslatedDistribution.
 

Uses of DistributionFactory in org.biojava.bio.dp
 

Constructors in org.biojava.bio.dp with parameters of type DistributionFactory
ProfileHMM(Alphabet alpha, int columns, DistributionFactory matchFactory, DistributionFactory insertFactory)
          Deprecated.  
ProfileHMM(Alphabet alpha, int columns, DistributionFactory matchFactory, DistributionFactory insertFactory, String name)
          Create a new ProfileHMM.
SimpleWeightMatrix(Alphabet alpha, int columns, DistributionFactory dFact)
           
 

Uses of DistributionFactory in org.biojava.bio.program.hmmer
 

Constructors in org.biojava.bio.program.hmmer with parameters of type DistributionFactory
HmmerProfileHMM(Alphabet alpha, int columns, DistributionFactory matchFactory, DistributionFactory insertFactory, String name)