|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use FastqBuilder | |
---|---|
org.biojava.bio.program.fastq | FASTQ and variants sequence format IO. |
Uses of FastqBuilder in org.biojava.bio.program.fastq |
---|
Methods in org.biojava.bio.program.fastq that return FastqBuilder | |
---|---|
FastqBuilder |
FastqBuilder.appendQuality(String quality)
Return this FASTQ formatted sequence builder configured with the specified quality scores appended to its current quality scores. |
FastqBuilder |
FastqBuilder.appendSequence(String sequence)
Return this FASTQ formatted sequence builder configured with the specified sequence appended to its current sequence. |
FastqBuilder |
FastqBuilder.withDescription(String description)
Return this FASTQ formatted sequence builder configured with the specified description. |
FastqBuilder |
FastqBuilder.withQuality(String quality)
Return this FASTQ formatted sequence builder configured with the specified quality scores. |
FastqBuilder |
FastqBuilder.withSequence(String sequence)
Return this FASTQ formatted sequence builder configured with the specified sequence. |
FastqBuilder |
FastqBuilder.withVariant(FastqVariant variant)
Return this FASTQ formatted sequence builder configured with the specified FASTQ sequence format variant. |
Methods in org.biojava.bio.program.fastq with parameters of type FastqBuilder | |
---|---|
protected void |
IlluminaFastqReader.validateDescription(FastqBuilder builder,
String description,
int lineNumber)
Validate the specified description. |
protected void |
SangerFastqReader.validateDescription(FastqBuilder builder,
String description,
int lineNumber)
Validate the specified description. |
protected void |
SolexaFastqReader.validateDescription(FastqBuilder builder,
String description,
int lineNumber)
Validate the specified description. |
protected void |
IlluminaFastqReader.validateQuality(FastqBuilder builder,
String quality,
int lineNumber)
Validate the specified quality scores. |
protected void |
SangerFastqReader.validateQuality(FastqBuilder builder,
String quality,
int lineNumber)
Validate the specified quality scores. |
protected void |
SolexaFastqReader.validateQuality(FastqBuilder builder,
String quality,
int lineNumber)
Validate the specified quality scores. |
protected void |
IlluminaFastqReader.validateRepeatDescription(FastqBuilder builder,
String repeatDescription,
int lineNumber)
Validate the specified repeat description. |
protected void |
SangerFastqReader.validateRepeatDescription(FastqBuilder builder,
String repeatDescription,
int lineNumber)
Validate the specified repeat description. |
protected void |
SolexaFastqReader.validateRepeatDescription(FastqBuilder builder,
String repeatDescription,
int lineNumber)
Validate the specified repeat description. |
protected void |
IlluminaFastqReader.validateSequence(FastqBuilder builder,
String sequence,
int lineNumber)
Validate the specified sequence. |
protected void |
SangerFastqReader.validateSequence(FastqBuilder builder,
String sequence,
int lineNumber)
Validate the specified sequence. |
protected void |
SolexaFastqReader.validateSequence(FastqBuilder builder,
String sequence,
int lineNumber)
Validate the specified sequence. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |