|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use SequenceDBInstallation | |
---|---|
org.biojava.bio.program.ssbind | Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD. |
org.biojava.bio.seq.db | Collections of biological sequence data. |
Uses of SequenceDBInstallation in org.biojava.bio.program.ssbind |
---|
Fields in org.biojava.bio.program.ssbind declared as SequenceDBInstallation | |
---|---|
protected SequenceDBInstallation |
ViewSequenceFactory.subjectDBs
|
Methods in org.biojava.bio.program.ssbind that return SequenceDBInstallation | |
---|---|
SequenceDBInstallation |
ViewSequenceFactory.getSubjectDBInstallation()
getSubjectDBInstallation returns the installation
in which all the databases searched may be
found. |
Methods in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallation | |
---|---|
void |
BlastLikeSearchBuilder.setSubjectDBInstallation(SequenceDBInstallation subjectDBs)
setSubjectDBInstallation sets the subject database
holder to a specific installation. |
void |
ViewSequenceFactory.setSubjectDBInstallation(SequenceDBInstallation subjectDBs)
setSubjectDBInstallation sets the subject database
holder to a specific installation. |
Constructors in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallation | |
---|---|
BlastLikeSearchBuilder(List target,
SequenceDB querySeqHolder,
SequenceDBInstallation subjectDBs)
Creates a new BlastLikeSearchBuilder which will
instantiate results into the List target. |
Uses of SequenceDBInstallation in org.biojava.bio.seq.db |
---|
Classes in org.biojava.bio.seq.db that implement SequenceDBInstallation | |
---|---|
class |
DummySequenceDBInstallation
DummySequenceDBInstallation is an implementation which
returns the same DummySequenceDB instance regardless
of the identifier used to retrieve a database. |
class |
SimpleSequenceDBInstallation
This class is an implementation of interface SequenceDBInstallation that manages a set of SequenceDB objects. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |