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Packages that use Fastq | |
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org.biojava.bio.program.fastq | FASTQ and variants sequence format IO. |
Uses of Fastq in org.biojava.bio.program.fastq |
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Methods in org.biojava.bio.program.fastq that return Fastq | |
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Fastq |
FastqBuilder.build()
Build and return a new FASTQ formatted sequence configured from the properties of this builder. |
Methods in org.biojava.bio.program.fastq that return types with arguments of type Fastq | |
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Iterable<Fastq> |
FastqReader.read(File file)
Read zero or more FASTQ formatted sequences from the specified file. |
Iterable<Fastq> |
FastqReader.read(InputStream inputStream)
Read zero or more FASTQ formatted sequences from the specified input stream. |
Iterable<Fastq> |
FastqReader.read(URL url)
Read zero or more FASTQ formatted sequences from the specified url. |
Methods in org.biojava.bio.program.fastq with parameters of type Fastq | ||
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FastqWriter.append(T appendable,
Fastq... fastq)
Append the specified FASTQ formatted sequences to the specified appendable. |
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protected void |
IlluminaFastqWriter.validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing. |
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protected void |
SangerFastqWriter.validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing. |
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protected void |
SolexaFastqWriter.validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing. |
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void |
FastqWriter.write(File file,
Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified file. |
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void |
FastqWriter.write(OutputStream outputStream,
Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified output stream. |
Method parameters in org.biojava.bio.program.fastq with type arguments of type Fastq | ||
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FastqWriter.append(T appendable,
Iterable<Fastq> fastq)
Append the specified FASTQ formatted sequences to the specified appendable. |
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void |
FastqWriter.write(File file,
Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified file. |
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void |
FastqWriter.write(OutputStream outputStream,
Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified output stream. |
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