Uses of Class
org.biojava.bio.structure.gui.util.AlignedPosition

Packages that use AlignedPosition
org.biojava.bio.structure.gui A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. 
org.biojava.bio.structure.gui.events Some event classes for the protein structure GUIs. 
org.biojava.bio.structure.gui.util Some utility classes for the protein structure GUIs. 
 

Uses of AlignedPosition in org.biojava.bio.structure.gui
 

Methods in org.biojava.bio.structure.gui that return types with arguments of type AlignedPosition
 List<AlignedPosition> SequenceDisplay.getAligMap()
           
 

Uses of AlignedPosition in org.biojava.bio.structure.gui.events
 

Methods in org.biojava.bio.structure.gui.events with parameters of type AlignedPosition
 void AlignmentPositionListener.mouseOverPosition(AlignedPosition p)
           
 void JmolAlignedPositionListener.mouseOverPosition(AlignedPosition p)
           
 void AlignmentPositionListener.positionSelected(AlignedPosition p)
           
 void JmolAlignedPositionListener.positionSelected(AlignedPosition p)
           
 void AlignmentPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)
           
 void JmolAlignedPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)
           
 

Uses of AlignedPosition in org.biojava.bio.structure.gui.util
 

Method parameters in org.biojava.bio.structure.gui.util with type arguments of type AlignedPosition
 void SequenceScalePanel.setAligMap(List<AlignedPosition> apos)