Uses of Interface
org.biojava.bio.seq.projection.ProjectionContext

Packages that use ProjectionContext
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
org.biojava.bio.seq.projection Code for projecting Feature objects and systematically altering their properties. 
 

Uses of ProjectionContext in org.biojava.bio.seq.impl
 

Classes in org.biojava.bio.seq.impl that implement ProjectionContext
 class SimpleGappedSequence.GappedContext
           
static class SubSequence.SubProjectedFeatureContext
          TargetContext that implements the mapping between the parent sequence and this sub-sequence.
 

Uses of ProjectionContext in org.biojava.bio.seq.projection
 

Classes in org.biojava.bio.seq.projection that implement ProjectionContext
 class ReparentContext
          A good base class to implement ProjectionContext from.
 class TranslateFlipContext
          A ProjectionContext that translates and optionaly flips features.
 

Methods in org.biojava.bio.seq.projection that return ProjectionContext
 ProjectionContext ProjectedFeatureHolder.getContext()
           
 ProjectionContext ProjectedFeature.getProjectionContext()
           
 ProjectionContext Projection.getProjectionContext()
           
 

Methods in org.biojava.bio.seq.projection with parameters of type ProjectionContext
 Feature ProjectionEngine.projectFeature(Feature f, ProjectionContext ctx)
          Return a projection of Feature f into the system defined by a given ProjectionContext.
 Feature.Template ProjectionEngine.revertTemplate(Feature.Template templ, ProjectionContext ctxt)
          Revert a template so that it can be used on the original feature-space.
 Feature.Template ProjectionEngine.TemplateProjector.revertTemplate(ProjectionContext ctxt, Feature.Template projTempl)
           
 

Constructors in org.biojava.bio.seq.projection with parameters of type ProjectionContext
ProjectedFeature(Feature f, ProjectionContext ctx)
           
ProjectedFeatureHolder(ProjectionContext context)