org.biojava.app
Class BioFlatIndex
java.lang.Object
org.biojava.app.BioFlatIndex
public class BioFlatIndex
- extends Object
BioFlatIndex
is a user application for performing
sequence flat file indexing according to the Open Bioinformatics
Database Access (OBDA) indexing standard. It may be used to create
a new index or to update an existing index with new files. When
creating a new index the sequence file format (currently one of
'fasta', 'swissprot', 'embl' or 'genbank', case-insensitive) and
alphabet ('dna', 'rna', 'aa', case-insensitive) must be
indicated. This information is stored in the index and is used by
the sequence retrieval code to determine how to treat the indexed
file(s). See the FLAT-DATABASES-HOWTO for more information.
- Author:
- Keith James, Matthew Pocock
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
BioFlatIndex
public BioFlatIndex()
main
public static void main(String[] argv)
throws Exception
- Throws:
Exception